Volume •Abstracts •Preface •Authors •Keywords •BibTex Entries

BICOB-2023: Volume Information

Proceedings of International Conference on Bioinformatics and Computational Biology (BICOB-2023)

Editors: Hisham Al-Mubaid, Tamer Aldwairi and Oliver Eulenstein

EPiC Series in Computing•Volume 92

10 articles•111 pages•Published: May 1, 2023

Papers

Uncovering the particularities of the dynamical interaction between cancer-related Epithelial-Mesenchymal Transition and the Mammalian Cell Cycle: a feedback-based Boolean networks interconnection approach

Luis Juárez-Ramiro, José Dávila-Velderrain, Alberto Soria-López, Elena R. Álvarez-Buylla and Juan Carlos Martínez-Garcia

1-10

Biomarker discovery in multi-omics datasets using tensor decompositions; A comprehensive review

Farnoosh Koleini, Paul Gemperline and Nasseh Tabrizi

11-24

Uncovering the interdependence between hypertension and the inflammatory response for the patient affected by Covid 19 through mathematical modeling and computer-based analysis

Rosario Pacheco-Marin, Carolina Caballero-Cordero, Jorge Arturo Arciniega-González, Elena R. Álvarez-Buylla and Juan Carlos Martínez-García

25-34

Transmembrane Protein Inter-Helical Residue Contacts Prediction Using Transductive Support Vector Machines

Bander Almalki, Aman Sawhney and Li Liao

35-46

Classifying Protein Families with Learned Compressed Representations

Ramin Dehghanpoor, Fatemeh Afrasiabi, Charles Fogel, Tung Dao, Suman Gautam, Aanab Nehela, Ahmad Nehela, Daniel Haehn and Nurit Haspel

47-57

Utilizing Functional Annotation of Disease Genes for Disease Clustering

Hisham Al-Mubaid and Tamer Aldwairi

58-71

The Velvet Assembler Using OpenACC Directives

Evaldo Costa and Gabriel Silva

72-81

Clarifying the biological nature of the interaction between the systems-based epigenetic landscape and the epigenome

José Luis Caldú-Primo, José Dávila-Velderrain, Juan Carlos Martínez-García and Elena R. Álvarez-Buylla

82-91

Uncovering the role of mutations in Epithelial-to-Mesenchymal transition through computational analysis of the underlying gene regulatory network

Jorge Enrique Narváez-Chávez, Elena R. Álvarez-Buylla and Juan Carlos Martínez-García

92-101

An Association Analysis of Breast Cancer with Carotenoids.

Samuel Neumann and Mohamad El-Hajj

102-111

Keyphrases

association analysis, Attractors landscape, Bioinformatics³, biomarker discovery, biomarkers, cancer, Cell differentiation and morphogenesis, CNN, complex networks, COVID-19, Discrete Boolean networks³, Disease clustering, Disease similarity and relationship, Epigenetic regulation, epigenomics, Epithelial cancer², epithelial-to-mesenchymal transition², Feedback-based interactions, gene mutations, gene regulatory networks³, Human blood pressure patterns, human exposome, Hypertension, Inductive Vs Transductive SVM, Inflammatory response, Inter-Helical Residue Contacts, machine learning, mammalian cell cycle, medical systems biology, Methematical modeling, multi-omics, neural network, OpenACC, parallel program, Protein family classification, reachability analysis, semi-tensor product, Systems-based epigenetics, systems biology², Systems biology of cancer, tensor decompositions, Transductive Support Vector Machines, transmembrane protein, VAE, Velvet.